論文・総説
	2021  2020  2019  2018  2017  2016  2015  2014  2013

2021

2020

Yumi Watanabe, Yoshitoshi Hirao, Kensaku Kasuga, Takayoshi Tokutake, Kaori Kitamura, Shunpei Niida, Takeshi Ikeuchi, Kazutoshi Nakamura, Tadashi Yamamoto. "Urinary Apolipoprotein C3 Is a Potential Biomarker for Alzheimer’s Disease" Dementia and Geriatric Cognitive Disorders Extra 2020;10:94–104. Sakai M, Yamamoto K, Mizumura H, Matsumoto T, Tanaka Y, Noda Y, Ishibashi K, Yamamoto T, Sasaki S.< "Phosphorylation profile of human AQP2 in urinary exosomes by LC-MS/MS phosphoproteomic analysis" Clin Exp Nephrol. 2020;4(9):762-769.

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2019

Amr Elguoshy, Yoshitoshi Hirao, Keiko Yamamoto, Bo Xu, Naohiko Kinoshita, Toshiaki Mitusi, Tadashi Yamamoto. "Utilization of the proteome data deposited in SRMAtlas for validating the existence of the human missing proteins in GPM" J. Proteome Res. 2019, 18, 4197-4205. Suguru Saito, Yoshitoshi Hirao, Ali F. Quadery, Bo Xu, Amr Elguoshy, Hidehiko Fujinaka, Shohei Koma, Keiko Yamamoto, Tadashi Yamamoto. "The optimized workflow for sample preparation in LC-MS/MS based urine proteomics" Methods and Protocols, 2019, 2, 46. Yoshitoshi Hirao, Naohiko Kinoshita, Bo Xu, Suguru Saito, Ali F. Quadery, Amr Elguoshy, Keiko Yamamoto, Tadashi Yamamoto. "Proteomics Analysis of Urine to Examine Physical Effects of Warm Nano Mist Sauna Bathing" Healthcare 2019, 7, 71. Yumi Watanabe, Yoshitoshi Hirao, Kensaku Kasuga, Takayoshi Tokutake, Yuka Semizu, Kaori Kitamura, Takeshi Ikeuchi, Kazutoshi Nakamura, Tadashi Yamamoto. "Molecular network analysis of the urinary proteome of Alzheimer’s disease patients" Dementia and Geriatric Cognitive Disorders Extra, 2019; 9: 53-65.

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2018

Yoshitoshi Hirao, Suguru Saito, Hidehiko Fujinaka, Shigeru Miyazaki, Bo Xu, Ali F. Quadery, Amr Elguoshy, Keiko Yamamoto, Tadashi Yamamoto. "Proteome Profiling of Diabetic Mellitus Patient Urine for Discovery of Biomarkers by Comprehensive MS-Based Proteomics" Proteomes, 2018, 6, 9. Kazusato Oikawa, Takuya Inomata, Yoshitoshi Hirao, Tadashi Yamamoto, Marouane Baslam, Kentaro Kaneko, Toshiaki Mitsui. "Proteomic Analysis of Rice Golgi Membranes Isolated by Floating Through Discontinuous Sucrose Density Gradient." Methods Mol Biol. 2018;1696:91-105. Yuko Miyazawa, Saki, Mikami, Keiko Yamamoto, Masaki Sakai, Tatsuya Saito, Tadashi Yamamoto, Kenichi Ishibashi, Sei Sasaki. "AQP2 in human urine is predominantly localized to exosomes with preserved water channel activities." Clin Exp Nephrol. 2018 Aug;22(4):782-788. Kazuaki Suda, Hirofumi Nakaoka, Kosuke Yoshihara, Tatsuya Ishiguro, Ryo Tamura, Yutaro Mori, Kaoru Yamawaki, Sosuke Adachi, Tomoko Takahashi, Hiroaki Kase, Kenichi Tanaka, Tadashi Yamamoto, Teiichi Motoyama, Ituro Inoue, Takayuki Enomoto. "Clonal Expansion and Diversification of Cancer-Associated Mutations in Endometriosis and Normal Endometrium" Cell Rep. 2018 Aug 14;24(7):1777-1789. 瀧澤 勇介 "グルタルアルデヒド固定パラフィン包埋組織のプロテオーム解析は不可能か?" 新潟医学会雑誌 第132巻第4号.

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2017

Amr Elguoshy, Yoshitoshi Hirao, Bo Xu, Suguru Saito, Ali F. Quadery, Keiko Yamamoto, Toshiaki Mitusi, Tadashi Yamamoto. "Identification and validation of human missing proteins and peptides in public proteome; Data mining strategy" J. Proteome Res. 2017, 16, 4403-4414. Akira Togayachi, Jun Iwaki, Hiroyuki Kaji, Hideki Matsuzaki, Atsushi Kuno, Yoshitoshi Hirao, Masaharu Nomura, Masayuki Noguchi, Yuzuru Ikehara, Hisashi Narimatsu. "Glycobiomarker, Fucosylated Short-Form Secretogranin III Levels Are Increase in Serum of Patients with Small Cell Lung Carcinoma" J. Proteome Res. 2017, 16, 4495-4505. Shymaa Enany, Yutaka Yoshida, Yoshitaka Tateishi, Yuriko Ozeki, Akihito Nishiyama, Anna Savitskaya, Takehiro Yamaguchi, Yukiko Ohara, Tadashi Yamamoto, Manabu Ato, Sohkichi Matsumoto. "Mycobacterial DNA-binding protein 1 is critical for long term survival of Mycobacterium smegmatis and simultaneously coordinates cellular functions" Sci Rep. 2017 Jul 28;7(1):6810. Shujiro Okuda, Yu Watanabe, Yuki Moriya, Shin Kawano, Tadashi Yamamoto, Masaki Matsumoto, Tomoyo Takami, Daiki Kobayashi, Norie Araki, Akiyasu C Yoshizawa, Tsuyoshi Tabata, Naoyuki Sugiyama, Susumu Goto, Yasushi Ishihama. "jPOSTrepo: an international standard data repository for proteomes" Nucleic Acids Res. 2017 Jan 4;45(D1):D1107-D1111. Tatsuya Abe, Satoshi Maruyama, Manabu Yamazaki, Bo Xu, Hamzah Babkair, Yoshimasa Sumita, Jun Cheng, Tadashi Yamamoto, Takashi Saku. "Proteomic and histopathological characterization of the interface between oral squamous cell carcinoma invasion fronts and non-cancerous epithelia" Exp Mol Pathol. 2017 Apr;102(2):327-336.

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2016

Sameh Magdeldin, Yoshitoshi Hirao, Amr Elguoshy, Bo Xu, Ying Zhang, Hidehiko Fujinaka, Keiko Yamamoto, John R. Yates III, Tadashi Yamamoto. "A proteomics glimpse into human ureter proteome" Proteomics. 2016, 16, 80-84. Sameh Magdeldin, Yoshitoshi Hirao, Amr Elguoshy, Bo Xu, Ying Zhang, Hidehiko Fujinaka, Keiko Yamamoto, John R. Yates III, Tadashi Yamamoto. "Comprehensive data analysis of human ureter proteome" Data in Brief. 6, 2016, 853-857. Amr Elguoshy, Sameh Magdeldin, Bo Xu, Yoshitoshi Hirao, Ying Zhang, Naohiko Kinoshita, Yusuke Takisawa, Masaaki Nameta, Keiko Yamamoto, Ali El-Refy, Fawzy El-Fiky, Tadashi Yamamoto. "Why are they missing? : Bioinformatics characterization of missing human proteins" Journal of Proteomics. 149, 2016, 7-14. Jennifer E Van Eyk, Fernando J Corrales, Ruedi Aebersold, Ferdinando Cerciello, Eric W Deutsch, Paola Roncada, Jean-Charles Sanchez, Tadashi Yamamoto, Pengyuan Yang, Hui Zhang, Gilbert S Omenn. "Highlights of the Biology and Disease-driven Human Proteome Project, 2015-2016" J Proteome Res. 2016 Nov 4;15(11):3979-3987. Masaaki Nameta, Yoko Saijo, Yasukazu Ohmoto, Kiyonori Katsuragi, Keiko Yamamoto, Tadashi Yamamoto, Kenichi Ishibashi, Sei Sasaki. "Disruption of Membranes of Extracellular Vesicles Is Necessary for ELISA Determination of Urine AQP2: Proof of Disruption and Epitopes of AQP2 Antibodies" Int J Mol Sci. 2016 Sep 26;17(10):1634. Mathias Uhlen, Anita Bandrowski, Steven Carr, Aled Edwards, Jan Ellenberg, Emma Lundberg, David L Rimm, Henry Rodriguez, Tara Hiltke, Michael Snyder, Tadashi Yamamoto. "A proposal for validation of antibodies" Nat Methods. 2016 Oct;13(10):823-7. Koji Takaori, Jin Nakamura, Shinya Yamamoto, Hirosuke Nakata, Yuki Sato, Masayuki Takase, Masaaki Nameta, Tadashi Yamamoto, Aris N Economides, Kenji Kohno, Hironori Haga, Kumar Sharma, Motoko Yanagita. "Severity and Frequency of Proximal Tubule Injury Determines Renal Prognosis" J Am Soc Nephrol. 2016 Aug;27(8):2393-406. Kei Goto, Yoshikatsu Kaneko, Yuya Sato, Tadashi Otsuka, Suguru Yamamoto, Shin Goto, Keiko Yamamoto, Tadashi Yamamoto, Hiroshi Kawachi, Michael P Madaio, Ichiei Narita. "Leptin deficiency down-regulates IL-23 production in glomerular podocytes resulting in an attenuated immune response in nephrotoxic serum nephritis" Int Immunol. 2016 Apr;28(4):197-208. Eishin Yaoita, Hiroko Nishimura, Masaaki Nameta, Yutaka Yoshida, Hiroki Takimoto, Hidehiko Fujinaka, Hiroshi Kawachi, Sameh Magdeldin, Ying Zhang, Bo Xu, Tomizo Oyama, Fujio Nakamura, Tadashi Yamamoto. "Avian Podocytes, Which Lack Nephrin, Use Adherens Junction Proteins at Intercellular Junctions" J Histochem Cytochem. 2016 Jan;64(1):67-76.

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2015

Sameh Magdeldin, Amr Elguoshy, Yutaka Yoshida, Yoshitoshi Hirao, Bo Xu, Ying Zhang, Keiko Yamamoto, Hiroki Takimoto, Hidehiko Fujinaka, Naohiko Kinoshita, Tadashi Yamamoto. "Complementary Protein and Peptide OFFGEL Fractionation for High-Throughput Proteomics Analysis" Anal, Chem. 2015, 87, 8481-8488. Masato Habuka, Linn Fagerberg, Björn M Hallström, Fredrik Pontén, Tadashi Yamamoto, Mathias Uhlen. "The Urinary Bladder Transcriptome and Proteome Defined by Transcriptomics and Antibody-Based Profiling" PLoS One. 2015 Dec 22;10(12):e0145301. Ying Zhang, Bo Xu, Naohiko Kinoshita, Yutaka Yoshida, Masayuki Tasaki, Hidehiko Fujinaka, Sameh Magdeldin, Eishin Yaoita, Tadashi Yamamoto. "Datasets from label-free quantitative proteomic analysis of human glomeruli with sclerotic lesions" Data Brief. 2015 May 27;4:180-5. Péter Horvatovich, Emma K Lundberg, Yu-Ju Chen, Ting-Yi Sung, Fuchu He, Edouard C Nice, Robert J Goode, Simon Yu, Shoba Ranganathan, Mark S Baker, Gilberto B Domont, Erika Velasquez, Dong Li, Siqi Liu, Quanhui Wang , Qing-Yu He , Rajasree Menon, Yuanfang Guan, Fernando J Corrales, Victor Segura, J Ignacio Casal, Alberto Pascual-Montano, Juan P Albar, Manuel Fuentes, Maria Gonzalez-Gonzalez, Paula Diez, Nieves Ibarrola, Rosa M Degano, Yassene Mohammed, Christoph H Borchers, Andrea Urbani, Alessio Soggiu, Tadashi Yamamoto, Ghasem Hosseini Salekdeh, Alexander Archakov, Elena Ponomarenko, Andrey Lisitsa, Cheryl F Lichti, Ekaterina Mostovenko, Roger A Kroes, Melinda Rezeli, Ákos Végvári, Thomas E Fehniger, Rainer Bischoff, Juan Antonio Vizcaíno, Eric W Deutsch, Lydie Lane, Carol L Nilsson, György Marko-Varga, Gilbert S Omenn, Seul-Ki Jeong, Jong-Sun Lim, Young-Ki Paik, William S Hancock. "Quest for Missing Proteins: Update 2015 on Chromosome-Centric Human Proteome Project" J Proteome Res. 2015 Sep 4;14(9):3415-31. Ying Zhang, Bo Xu, Naohiko Kinoshita, Yutaka Yoshida, Masayuki Tasaki, Hidehiko Fujinaka, Sameh Magdeldin, Eishin Yaoita, Tadashi Yamamoto. "Label-free quantitative proteomic analysis reveals strong involvement of complement alternative and terminal pathways in human glomerular sclerotic lesions" J Proteomics. 2015 Jun 18;123:89-100. Ying Zhang, Markus Muller, Bo Xu, Yutaka Yoshida, Oliver Horlacher, Frederic Nikitin, Samuel Garessus, Sameh Magdeldin, Naohiko Kinoshita, Hidehiko Fujinaka, Eishin Yaoita, Miki Hasegawa, Frederique Lisacek, Tadashi Yamamoto. "Unrestricted modification search reveals lysine methylation as major modification induced by tissue formalin fixation and paraffin embedding" Proteomics. 2015 Aug;15(15):2568-79. Sameh Magdeldin, Rachel E Blaser, Tadashi Yamamoto, John R Yates 3rd. "Behavioral and proteomic analysis of stress response in zebrafish (Danio rerio)" J Proteome Res. 2015 Feb 6;14(2):943-52.

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2014

Masato Habuka, Linn Fagerberg, Björn M Hallström, Caroline Kampf, Karolina Edlund, Åsa Sivertsson, Tadashi Yamamoto, Fredrik Pontén, Mathias Uhlén, Jacob Odeberg. "The kidney transcriptome and proteome defined by transcriptomics and antibody-based profiling" PLoS One. 2014 Dec 31;9(12):e116125. Sameh Magdeldin, James J Moresco, Tadashi Yamamoto, John R Yates 3rd. "Off-Line Multidimensional Liquid Chromatography and Auto Sampling Result in Sample Loss in LC/LC-MS/MS" J Proteome Res. 2014 Aug 1;13(8):3826-36. Masamune Aihara, Xiulian Jin, Yusuke Kurihara, Yutaka Yoshida, Yuichi Matsushima, Masahide Oku, Yuko Hirota, Tetsu Saigusa, Yoshimasa Aoki, Takeshi Uchiumi, Tadashi Yamamoto, Yasuyoshi Sakai, Dongchon Kang, Tomotake Kanki. "Tor and the Sin3-Rpd3 complex regulate expression of the mitophagy receptor protein Atg32 in yeast" J Cell Sci. 2014 Jul 15;127(Pt 14):3184-96. Sameh Magdeldin, Tadashi Yamamoto, Ikuo Tooyama, Essam M Abdelalim. "New proteomic insights on the role of NPR-A in regulating self-renewal of embryonic stem cells" Stem Cell Rev Rep. 2014 Aug;10(4):561-72. Sameh Magdeldin, Shymaa Enany, Yutaka Yoshida, Bo Xu, Ying Zhang, Zam Zureena, Ilambarthi Lokamani, Eishin Yaoita, Tadashi Yamamoto. "Basics and recent advances of two dimensional- polyacrylamide gel electrophoresis" Clin Proteomics. 2014 Apr 15;11(1):16. Sameh Magdeldin, Keiko Yamamoto, Yutaka Yoshida, Bo Xu, Ying Zhang, Hidehiko Fujinaka, Eishin Yaoita, John R Yates 3rd, Tadashi Yamamoto. "Deep proteome mapping of mouse kidney based on OFFGel prefractionation reveals remarkable protein post- translational modifications" J Proteome Res. 2014 Mar 7;13(3):1636-46. Eishin Yaoita, Yutaka Yoshida, Masaaki Nameta, Ying Zhang, Hidehiko Fujinaka, Sameh Magdeldin, Bo Xu, Tadashi Yamamoto. "Heparin increasing podocyte-specific gene expressions" Nephrology (Carlton). 2014 Apr;19(4):195-201. Tomoko Iida, Hidehiko Fujinaka, Bo Xu, Ying Zhang, Sameh Magdeldin, Masaaki Nameta, Zan Liu, Yutaka Yoshida, Eishin Yaoita, Shuichi Tomizawa, Akihiko Saito, Tadashi Yamamoto. "Decreased urinary calbindin 1 levels in proteinuric rats and humans with distal nephron segment injuries" Clin Exp Nephrol. 2014 Jun;18(3):432-43. Yohei Tsuchida, Yoshikatsu Kaneko, Tadashi Otsuka, Kei Goto, Akihiko Saito, Keiko Yamamoto, Tadashi Yamamoto, Ichiei Narita. "Upregulation of prolactin receptor in proximal tubular cells was induced in cardiac dysfunction model mice" Clin Exp Nephrol. 2014 Feb;18(1):65-74.

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2013

Shymaa Enany, Yutaka Yoshida, Sameh Magdeldin, Xu Bo, Ying Zhang, Mohamed Enany, Tadashi Yamamoto. "Two dimensional electrophoresis of the exo-proteome produced from community acquired methicillin resistant Staphylococcus aureus belonging to clonal complex 80" Microbiol Res. 2013 Oct 1;168(8):504-11. Zenyui Cui, Yutaka Yoshida, Bo Xu, Ying Zhang, Masaaki Nameta, Sameh Magdeldin, Tomoo Makiguchi, Toshikazu Ikoma, Hidehiko Fujinaka, Eishin Yaoita, Tadashi Yamamoto. "Profiling and annotation of human kidney glomerulus proteome" Proteome Sci. 2013 Apr 8;11(1):13. Masayuki Tsuneki, Satoshi Maruyama, Manabu Yamazaki, Bo Xu, Ahmed Essa, Tatsuya Abé, Hamzah Babkair, Jun Cheng, Tadashi Yamamoto, Takashi Saku. "Extracellular heat shock protein A9 is a novel interaction partner of podoplanin in oral squamous cell carcinoma cells" Biochem Biophys Res Commun. 2013 Apr 26;434(1):124-30. Tadashi Yamamoto, Keiichi Nakayama, Hisashi Hirano, Takeshi Tomonaga, Yasushi Ishihama, Tetsushi Yamada, Tadashi Kondo, Yoshio Kodera, Yuichi Sato, Norie Araki, Hiroshi Mamitsuka, Naoki Goshima. "Integrated view of the human chromosome X-centric proteome project" J Proteome Res. 2013 Jan 4;12(1):58-61. Zan Liu, Bo Xu, Masaaki Nameta, Ying Zhang, Sameh Magdeldin, Yutaka Yoshida, Keiko Yamamoto, Hidehiko Fujinaka, Eishin Yaoita, Masayuki Tasaki, Yuki Nakagawa, Kazuhide Saito, Kota Takahashi, Tadashi Yamamoto. "Profiling of kidney vascular endothelial cell plasma membrane proteins by liquid chromatography-tandem mass spectrometry" Clin Exp Nephrol. 2013 Jun;17(3):327-37.

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2024		新潟大学		Biofluid Biomarker Center,
		生体液バイオマーカーセンター		Niigata University